Yeah he told Luke and the Mighty Avengers team what had happened with Otto taking over his body and apologized for things Otto did in his body. It was in the middle of Axis and unbeknownst to everyone Luke was still inverted and wouldn't accept Peter's attempt to mend fences. I can't recall a conversation addressing this after Luke was himself again too since Spidey was still a member of the team after that it would seem they were cool.