I think you mean Spider-Geddon #5, since Clone Conspiracy #5 (or #4 before it) was what damaged Ben as a character in the first place. Him becoming the Jackal as a way to make sense out of what'd been done to him and make his torturous resurrection not be for nothing was a good angle that could've worked, but sending him right into psychotic supervillain territory as soon as Peter told him he was wrong and called him out using the memory of Uncle Ben to punctuate why he was wrong was not a good look by any means. Thankfully, now that Ben's soul is fixed, he can finally move past what was done to him in a more constructive, or at least less destructive, manner and we as fans can start putting it behind us, I would hope.