Originally Posted by
Nero
For me, it's Darkwing Duck. In fact one of my main attractions to the show was how they featured an amazing set of villains.
Megavolt
Quackerjack
Steelbeak (my personal favorite)
Negaduck
Bushroot
Liquidator
Splatter Phoenix
Professor Moliarty
Taurus Bulba
Tuskernini
etc.
Powerpuff Girls also had a pretty solid rogues gallery.