And this all makes for a deeper story for the X-men, who they are, what they stand for and what they don't. I'm reminded of an ep from XAS where the scientist is arguing with Master Mold about it's protecting humans from mutants, and MM says "mutants are human, therefore, you must be protected from yourselves."
Don't know if Hickman is going for a deeper look at what is humankinhd vs mutantkind but what he seems to be setting up is a gray landscape.