One of the things I loved about Marvel was always the coherency of its shared setting. Sure there were gaffs here and there, and some characters seemed to dwell in an MU that was more congruent with, than part of the rest (i.e. Dr. Strange), but it was this big, vast interconnected world with a common history that mattered. Most fun of all, most of that stuff congealed over time as writers filled in holes or made use of one another's creations.
I'm not talking about the huge ones, like "The Kree-Skrull War," where Thomas was deliberately stitching previously disparate pieces of the environment together. I'm talking about the seasonings, rather than the entrees. What were the small things that helped pull the MU together and make it whole.
One of my early favorites was The Amazing Spider-Man 16, where the title character, and a new-comer/guest-star (Daredevil) windup tangling with a Hulk villain (Ringmaster and his Circus of Crime).
Another was Peter Henry Gyrich. He went from being a plot point about how governments might react to an organization like the Avengers, to a point-man on the mutant witch hunts, to an all-purpose government fixer-type that might appear anywhere.