While there's no doubting that mutants have faced oppression and racism from many non-mutants in the past, is it really fair to paint the millions of humans who were ambivalent or even supportive of mutants in the same light as William Stryker and the Trasks?
Or for that matter, their non-mutant friends, allies and teammates, who are also being shunned and seen in the same way as any anti-mutant racist. They've been on good terms with the Fantastic Four, the Avengers, and individual heroes like Spider-Man, and there have been non-mutant heroes who've served the X-Men and related teams, like Omega Sentinel, yet they're not allowed on Krakoa either.
Yet, they're allowing murderers, rapists and other such scumbags in the nation
just for being mutants...
And, dude, it has been noted in-universe how weird they are. Right there in the first issue you have the Fantastic Four, in particular Reed, not liking this one bit. Reed isn't an anti-mutant racist, either.
Don't get the wrong idea about me, I think it's an interesting story. I do not, however, believe that this is the permanent status quo no matter how much change is ahead of us.