I read Empyre #1 and a lot of it is from Tony's point of view. spoilers:end of spoilers
Tony comes with a plan to takeout the Kree/Skrull fleet with a virus and it works, but the Coati that the Avengers were fighting for turn out to be the bad guys and now the fleet is left defenseless for the Coati to kill. Tony thought he was doing the right thing due to the vision he had, but it turns out that he is being mental manipulated. Now everyone is looking to put the blame on Tony's shoulders.