Captain Atom - has Major Force and I cannot think of anyone else!
Blue Beetle (both Ted and Jaime) have pretty slim pickings.
The Question - Take your pick Vic or Montoya.
Martian Manhunter - Poor J'Onn has been well & truly shafted in the villains department.
Green Arrow - Ollie's rogues list is surprisingly thin considering his publishing history.
Nightwing - Other than Blockbuster and Torque.... maybe Shrike?