If the problem is his status as a Chosen One or Daddy Zeus, just de-Chosen him and make him clay the next reboot. Instead of Hypolitta having just Diana when she was killed in prehistory, she had a triplet. Diana, Nubia, and Jason, all clay, but Jason are shipped off Paradise Island.

No, wait, I just realized that wouldn't work since only female souls are stored in the womb of Gaia. Nevermind.

Jason can be the descendant of Antiope or any of the other mainland Amazons. Problem solved. He can even retain the power of Zeus now since he doesn't interfere with the Paradise Island lore anymore.

I don't really care if he's Diana's brother or not, I just want a Wonder Boy.