We're continuing to see Marvel set up a future Mutants vs the Marvel Universe. Violating and threatening allies for things that might be misused in the wrong hands is complete foolishness. In a desperate attempt to prevent one future where mutants are extinguished, Charles may be ensuring another one exists. Walking down the road of eliminating and erasing ANY human progress that might be deleterious to the future prosperity and dominance of mutants is going to lead down an ugly road. We already saw that with Beast doing his part for the safety of the mutant species.
I cannot wait.
To eventually see even mild heroes like Spider-Man against mutants simply because they're causing chaos worldwide in preemptive strikes is going to be wild. BTW, there is plenty of use for a device that permanently deletes the X-gene from someone. Humanity would finally have a way of ridding themselves of horrors like Apocalypse, Selene, Magneto, etc...
Edit: Thinking about this more, Charles' action is completely indefensible. If Charles were doing this to a good guy female super-genius people would wretch. The violation and the hanging threat of more violation should they not behave in the way they demand.