They'll mess it up and completely bungle the original analogy, but I would make it a metaphor for recent civil unrest/BLM protesting. The evil mutants use having powers as an excuse to do horrible things, and the X-Men are the last line of positive change occurring through peaceful methods, even if they have to stop those who would use it for their own ends. I am from the school of thought though that Magneto is a self serving SOB however who would push mutant kind in front of the bus if it gave him personal power or glory.
And I think it's really important- which they will never do of course- to have the rest of the world say how great it is to be a mutant and have it be a woke cause. It's not very interesting to always portray the world of Marvel as horribly racist out to lynch mutants every chance they get and this being the overwhelming majority opinion, and it's not very realistic in this day and age.