I'll comment on your initial post with the page and panels you shared later because I think they underscore some interesting points, but, as Wall Streeter pointed out, Claremont wrote two of those examples years after the original story. Additionally, there are various "literary perspective[s]," including first, second, and third-person perspectives, and the psychological, social power, formalist, historical, biographical, reader-response, archetypal, and gender perspectives (sources:
https://literarydevices.net/perspective/; http://www.socialstudies.com/pdf/Figure_7.5.pdf).
In either case, I would say your past interpretations of Scott's telepathic affair with Emma and Logan kissing Jean have taken liberties with the source material based on your perspective(s). While I agree with you that, in the former, Emma was manipulative, and in the latter, what Logan did could be, in some cases, categorized as assault, I don't ascribe the levels of meaning to those instances that you do. For example, I believe once Scott realized what Emma was doing, he became equally if not more responsible for ending their interaction. The same with your views on Logan; I don't feel, as you do, that Jean was frightened and traumatized by his kisses.
Interestingly enough, Mastermind not only kissed and touched Jean inappropriately without her consent (she was mind-controlled, as he, himself, admits), he had her dress in a skimpy frock - a bodice and panties - as he controlled her. By the romantic nature of their interactions, one can assume (though this isn't fact, i.e., not depicted on-panel) that their "marriage" was consummated, and that they shared other intimate moments throughout the course of the story. In either case, while I don't doubt that a dangerous kind of love and sweeping romanticism was one of Jean's "dark desires" (is that really dark?), I don't think it excuses the liberties he took with nor the violations he perpetrated against her mind and body.
I understand if you don't want to discuss this, but, as I noted at the beginning of this post, I will be commenting on the page and panels you posted because they bring up some interesting and valid points.