There is usually some sort of crappy behavior from the victim of the super-bullying to make it seem like they 'deserve it,' but yeah, it shows up in the first Spider-Man movie, where Peter ends up humiliating Flash in the hallway (oh, but Flash was a bully himself, so I guess it's okay to bully bullies?), or in Man of Steel where Clark mangles the logging-trucker's truck in 'get him back' for harassing a waitress ('cause gosh, them ladies can't stand up for themselves).
I don't really like scenes that make me want to be complicit in or approving of jerkish or bullying behavior.
(That said, I'm more tolerant of that sort of thing from people like Batman, the Punisher or Daredevil, who aren't super-strong or tough, and kind of need to inspire fear as part of their schtick. But then I also recognize that I am not the target audience for those characters, either. It's when Superman or Spider-Man or, my least favorite example, Ultimate Captain America, are portrayed as super-bullies. That's just tarnishing the silverware, IMO.)