I think it is an issue when those lines are the ones that make the mandate. It's like setting yourself up to fail. Civil War, Terrigen Bomb, Registration, the mutant side did deal with those issues and eventually they did solve them and sometimes with help but in the main books where it started they pretty much ignored how it effected mutants and if your Earth's mightest heroes then that should be dealt with in your book. But it is what it is.