You make a good point here. The thing for people to think about is if this new origin has taken away the innocence of the story and makes a separation between Wonder Woman and the kids who could become fans one day.
Another thing is while Zola didn't know that the man she was with was Zeus, it appeared Hypolyta did know it was Zeus which means unlike Zola, she was aware of Hera's existence. This makes it not so accidental. Seems kind of different to the lonely queen whose love helped bring clay to life.