This I understand and see as a fair point.Regarding Wanda and Jean: the difference is that with Jean, the people who held her as dangerous and genocidal were aliens, not eartheans. In the case of Wanda, those people are eartheans (human mutants) who live in the same world as her, so the perception when we read comics is that she is more hated, which is true because she is in Earth. Earth people were not very concerned with holding Jean acocuntable as the Shi'ar were, simply because those things didn't happened to them but to aliens. It's hypocritical? maybe yes, but not unexpected. People in general tend to have harder feelings about things that happened to them than things that happened to others, and this is the situation of Wanda. Probably aliens are not very concerned about Wanda as well. The Skrulls don't seem to have a problem with her at all, for example, as was seen in SWORD with Paibok. I'm saying this as how I see things In-Universe, since opinions in the fandom can vary between objective or subjective in the matter.
In the case of Cyclops or Storm, I don't think they can be compared to the situations of Jean and Wanda, the incidents of these two are in another level.