The main preference is for her to be used at all, but that doesn't seem likely. Marvel clearly do not want to use the character regularly in comics under any circumstances.
I do think it's clear that the "Magnus family" concept has done nothing but harm the character, whether it's the original House of M, or "Wolverine & the X-Men" keeping her out of the Avengers cartoon where she belonged, or the undeserved popularity of House of M influencing her movie portrayal so much that they're apparently doing the same story twice in a row.
So I would certainly root against her being used that way in the comics, because it's been nothing but bad for her in the past, and the only thing that would be good for her would be to be back on the Avengers and interacting with the characters who actually matter in her story.
But it's moot because they won't use her at all.