The animated stuff and the DCEU aren't connected to the comics in any way.
Sensation and Agent of Peace were non-canon anthology series.
n52 was a hard reboot. Completely changed her origin and lore. Superman also couldn't fly for some time in Grant Morrison's n52 Action run.
I don't like when they get rid of her flight either, in fact it's a big pet peeve, but this is literally just a continuation of the current ongoing with new numbering and a new creative team.