Batman and Robin by Grant Morrison
Batman and Robin by Grant Morrison
Batman R.I.P.
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Blue text denotes sarcasm
I'm glad it was 'story' and not 'issue', because my vote is for the epic known as, No Man's Land.
The Dark Knight Returns or Blind Justice. Too close to call for me.
Keep your hands to yourself, leave other people's things alone, and be kind to one another.
Detective Comics #526 - "All my enemies against me"
Batman Arkham Asylum by Grant Morrison
Ten Nights of the Beast
Paul Dini's Dark Night. This isn't about Batman but it's THE Batman story.
The Dark Knight
If you specifically mean comics wise, then I'd say Batman RIP by Grant Morrison
In terms of memorable, I know most "real Batman fans" hate it... but Emperor Joker. It made sense, it worked with internal logic... and had neat character moments.