Originally Posted by
whitecrown
I was going through the Insomniac game's leaks again, and you're right, the game ends with Apocalypse as the new villain.
Also Scott is actually shown at the end. When Jean sets up the mutant village in Madripoor, she's seen with Forge and Scott so we have definite confirmation he'll be appearing in the next game (as if there was ever any doubt). Similarly, Logan is seen finding Kitty so we'll probably have an X-Men team of at least Logan, Jean, Scott, Kitty, and Forge. Maybe Sunfire as well if Shiro is brought back from Japan.
However, I don't think Scott/Jean will be treated as the endgame couple for this series. There will still probably be a love triangle but I think it'll be favored towards Logan. Reading through the leaks, it seems like they changed the storyline so that Wolverine doesn't kill Jean's parents anymore. In one version, he breaks up with her at the end because he thinks his presence causes harm to everyone around him. Very much like how Peter breaks up with MJ at the end of the first Raimi movie or when he breaks up with Gwen at the end of ASM, as we saw how long those breakups both lasted. In another version, Jean breaks up with Logan because she feels he doesn't trust her enough. She wanted to keep Sinister alive and use his powers but Logan thinks it'll corrupt her so he kills Sinister. Even after they break up though and Logan leaves, the script notes that Jean looks back, expecting to see him still there, and she's carving his initial on her bedframe at the end before she has the vision of Apocalypse. In all these versions, she knows that he killed Callisto but she doesn't blame him. With Wolverine primed as the main character of this series, I don't see him and Jean ultimately not ending up together in these games.