Originally Posted by
Viteh
Yeah, we don't know what exactly went down in life 9, but Moira and Apocalypse did rescue the original horsemen (and not Genesis apparently). Timeline wise, according to X-Men Red at least, Genesis had already put on the helmet and basically surrendered Arakko to Amenth. However, Moira and Apocalypse "rescue" the horsemen about 30 years prior to when the events of X of Swords happen in our timeline, so maybe they were more willing to abandon Genesis when Apocalypse showed up on his own?
Edit:
A more meta answer is probably that Genesis had not been conceptualized when House of X was written, or at least not completely. Only the Horsemen had been mentioned by that point,