I see where you're coming from entirely. They've essentially mini-retcon'd her.
I liked Daisy originally during Secret War and Secret Warriors. I felt like after that, she became too similar to Maria Hill (which wasn't helped by Marvel actually giving her Hill's job), so I don't necessarily mind the change. I think I prefer this version of the character than her post-secret warriors / pre SHIELD self, but have enjoyed and will continue to enjoy the main stories she's been in since her introduction.