Everyone is correct regarding Cyclops' moral alignment (this is getting way off topic).
To the MU at large Scott is a villain. It's the same as Tony Stark in Civil War. But when Cyclops is the protagonist he's portrayed as a hero.
The whole goal of these Hero vs. Hero things is there is no right and wrong. The readers pick a side. Civil War was more or less an abject failure in this regard, but that's the purpose of schism as well. Do it Yourself Flamewars.