Oh, my bad I thought the scan says she did. But yes with high-level EM Spectrum manipulation Storm should be able to control every particle in the universe.
Phoenix Rachel stated The Phoenix force is one of the fundamental forces of nature too. It makes sense Kirbons is a fundamental source of existence because it comes from the Phoenix itself.
This leads me to believe this possibly. I was going to ask this the other day but I never got time and forgot. The phoenix force is a fundamental force of nature and also created the big bang. This means Storm all along should have been able to manipulate the phoenix energy. She could have possibly used phoenix powers to amps her and against phoenix Jean Grey in the Dark Phoenix Saga, AVX, and more.