The entire premise of Wolverine being the grand leader of the X-Men necessitated both Storm and Cyclops be mischaracterized. Cyke getting all emo after Jean dies/Phoenixes is basically accurate to his canon, but for Storm to run off to Africa to play goddess again after Jean/Xavier 'died' in that universe was way OOC. She would have risen to the mantle of leadership like she did in the comics when Xavier was in space after Jean died/Cyke left.